Cirrhosis is end-stage liver fibrosis characterized by nodular regeneration, portal hypertension, and progressive hepatic failure.

The gut-liver axis is central: portal venous blood delivers gut-derived LPS, bacterial DNA, and viable bacteria directly to the liver, and cirrhosis-associated gut barrier failure amplifies this toxic load—creating a feed-forward cycle of Endotoxemia → hepatic Metal-Driven Inflammation → further barrier disruption.

A complete liver teaching model has a circular cutaway containing rounded tissue groupings separated by pale fibrous bands.
Pathology reconstruction Editorially reviewed

Representative fibrous architectural remodeling in liver cirrhosis. The cutaway suggests septa around regenerative nodules without asserting a cause, complication, stage, or diagnosis.

WikiBiome / Microbiome MedicineNLM-MeSH-condition-, NIDDK-hepatic-scar-tissue-, fibrous-septa-, and literal-output-audit-informed reconstruction
Scientific media record1 verified identifier
Subject
Liver Cirrhosiscondition
Identifiers
MeSH:D008103
Review
Editorial review completeIdentifiers authority-verified · Accessibility validated · · cirrhosis|cirrhosis-pathology-v1.webp
Digital source
Trained-algorithmic mediaCreated with a trained generative algorithm and reviewed by WikiBiome for subject identity, scientific framing, identifiers, provenance, and accessibility.
License
CC BY-SA 4.0Created
Evidence map3 cited passagesInspect provenance +
01
Key Connections

Gut dysbiosis: Cirrhosis depletes Bacteroidetes and SCFA producers while enriching oral-origin taxa (Streptococcus, Veillonella) that translocate to the gut—a distinctive "oralization" of the gut microbiome.

02
Key Connections

Metal hepatotoxicity: Chronic cadmium, arsenic, lead exposure drives hepatic fibrosis independently of viral or alcoholic causes.

03
Key Connections

Mediterranean diet: Protective dietary pattern associated with reduced cirrhosis progression.

Integrated microbiome signature

One disease. Five evidence layers.

A generated systems view of the metals, organisms, host sequestration signals, ecological conditions, and microbial functions indexed for Cirrhosis.

01

Evidence layer

Metallomic signature

Elements and antioxidants reported as elevated, accumulated, depleted, or systemically altered.

Elevated or accumulated

0

No structured signals indexed yet.

Depleted or redistributed

0

No structured signals indexed yet.

02

Evidence layer

Taxonomic signature

Organisms reported as enriched or depleted, with their indexed functional context kept beside the name.
Enriched taxa0

No structured taxa indexed yet.

Depleted taxa0

No structured taxa indexed yet.

03

Evidence layer

Nutritional immunity

Host metal-withholding, inflammatory, antioxidant, and microbial-metabolite signals indexed in the signature.

Elevated host signals

0

No structured signals indexed yet.

Depleted protective signals

0

No structured signals indexed yet.

04

Evidence layer

Ecological state

The environmental conditions that connect the organism-level observations into a system.
WB.ECO / SYSTEM MODEL0 connected states

No structured ecological features indexed yet.

EnvironmentCommunity structureHost response
05

Evidence layer

Virulence functions

Microbial structures, enzymes, and acquisition systems implicated by the linked evidence.

No structured virulence functions indexed yet.

Encyclopedia article

The disease record, in full.

The original WikiBiome disease narrative remains intact beneath the generated signature atlas.

Key Connections#

Gut Dysbiosis: Cirrhosis depletes Bacteroidetes and SCFA producers while enriching oral-origin taxa (Streptococcus, Veillonella) that translocate to the gut—a distinctive "oralization" of the Gut Microbiome.[1]The gut microbiome in atherosclerotic cardiovascular diseaseZhuye Jie, Huihua Xia, Shi-Long Zhong et al. · 2017Open reference 1

Hepatic encephalopathy: Urease-producing gut bacteria (Helicobacter pylori, Klebsiella, Proteus mirabilis) generate Ammonia → portal circulation → brain toxicity. Metal hepatotoxicity: Chronic Cadmium, Arsenic, Lead exposure drives hepatic fibrosis independently of viral or alcoholic causes.[2]Toxicity, Mechanism and Health Effects of Some Heavy MetalsMonisha Jaishankar, Tenzin Tseten, Naresh Anbalagan et al. · 2014Open reference 2

Mediterranean diet: Protective dietary pattern associated with reduced cirrhosis progression.[3]Latorre-Pérez 2021 — The Spanish Gut Microbiome Reveals Links Between Microorganisms and Mediterranean DietAdriel Latorre-Pérez, Marta Hernández, Jose Ramón Iglesias et al. · 2021Open reference 3

Cross-References#

Generated evidence record

References 4

Numbered by first appearance in the article, then reconciled with its declared source list.

  1. 1

    Zhuye Jie, Huihua Xia, Shi-Long Zhong et al. (2017). The gut microbiome in atherosclerotic cardiovascular disease. Nature Communications.

  2. 2

    Monisha Jaishankar, Tenzin Tseten, Naresh Anbalagan et al. (2014). Toxicity, Mechanism and Health Effects of Some Heavy Metals. Interdisciplinary Toxicology.

  3. 3

    Adriel Latorre-Pérez, Marta Hernández, Jose Ramón Iglesias et al. (2021). Latorre-Pérez 2021 — The Spanish Gut Microbiome Reveals Links Between Microorganisms and Mediterranean Diet. Scientific Reports.

  4. 4

    Robert J. Maier, Stéphane L. Benoit (2019). Role of Nickel in Microbial Pathogenesis. Inorganics.

Knowledge graph

Article network

Researcher discussion

Connect the evidence

Publicly readable discussion by ORCID-authenticated researchers. Questions, interpretation, methods, corrections, and new evidence stay attached to this record.

0 posts

No discussion yet. Start with a precise question or a source-backed observation.

Transparent record

Activity and accepted changes

Accepted researcher context, editorial status, public discussion, and upstream Git revisions are shown together. Pending, declined, and withdrawn proposals remain private.

6 events
  1. published revision

    Backfill gut microbiome concept links

    Karen Pendergrass · +1 −1

    Inspect exact Git diff ↗
  2. published revision

    Backfill inflammation concept links

    Karen Pendergrass · +1 −1

    Inspect exact Git diff ↗
  3. published revision

    Complete corpus-wide Dysbiosis linking

    Karen Pendergrass · +1 −1

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  4. published revision

    Complete Ammonia contextual coverage

    Karen Pendergrass · +1 −1

    Inspect exact Git diff ↗
  5. published revision

    Complete reviewed Urease contextual coverage

    Karen Pendergrass · +1 −1

    Inspect exact Git diff ↗
  6. published revision

    massive wiki expansion: 149 stubs fixed, 100+ new pages, Rule 15 scan, keystone papers

    WikiBiome Deploy Bot · +39 −0

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Generated from the WikiBiome Markdown vault; disease and signature records are reconciled at build time.

4 references · 1 content records · 822 corpus pages