Run mode: online
DOI audit
- Total source pages: 1716
- Format-valid DOIs: 1515
- Missing (`doi:` field empty): 0
- Explicitly not-applicable: 0
- Marked `not yet verified`: 201
- Bad format: 0
Crossref resolution failures
These are the "first part of the link is correct, but then the link is wrong" bugs — DOIs that look valid but do not resolve to the stored paper.
DOI not found in Crossref
These DOIs return 404 from api.crossref.org. Nearly all of these are fabricated — the journal prefix is usually correct but the article number does not exist.
| File | Stored DOI | Stored title |
|---|---|---|
| `aho-2019-gut-microbiome-disease-progression-parkinsons.md` | `10.1038/s40035-019-0175-7` | Aho 2019 — Gut Microbiome and Disease Progression in Parkinson's Disease |
| `akdag-2023-heavy-metal-toxicity-autism-risk-factor.md` | `10.5606/jebms.2023.1065` | Akdag 2023 — Heavy Metal Toxicity: A Potential Risk Factor for Autism |
| `azami-2019-anemia-ppd-meta-analysis.md` | `10.22088/cjim.10.2.115` | The association between anemia and postpartum depression: A systematic review and meta-analysis |
| `barrea-2019-mediterranean-diet-pcos.md` | `10.3390/nu11061594` | Adherence to the Mediterranean Diet, Dietary Patterns and Body Composition in Women with Polycystic |
| `basal-ganglia-review-parkinsons-systematic.md` | `10.1016/j.baga.2020.100142` | Obeso 2020 — Basal Ganglia Dysfunction in Parkinson's Disease: A Systematic Review |
| `bisht-2024-malonate-lung-pseudomonas-metal-stress.md` | `10.21203/rs.3.rs-4422908/v1` | Bisht 2024 — Malonate Is Relevant to the Lung Environment and Induces Genome-Wide Stress Responses i |
| `bopp-2024-o2-uncoupling-rieske-oxygenase-iron-ros-adaptation.md` | `10.1021/acsenvironau.4c00018` | Bopp 2024 — Elucidating the Role of O2 Uncoupling for the Adaptation of Bacterial Biodegradation Rea |
| `brown-2024-covid-19-neuroinflammation-pathophysiology.md` | `10.1136/bmj.p1410` | Brown et al. 2024 — Pathophysiology, Diagnosis, and Management of Neuroinflammation in COVID-19 |
| `chairatana-2015-salmochelin-pathogen-selective-killing.md` | `10.1039/c5sc0962f` | Chairatana et al. 2015 — Salmochelin Conjugates for Pathogen-Selective Killing |
| `chao-2025-microbiota-gut-brain-perinatal-depression.md` | `10.2174/011570159X338046625071006140` | Chao 2025 — The Role of the Microbiota-Gut-Brain Axis in Perinatal Depression: Novel Insights for Tr |
| `chen-2022-16s-rrna-microbial-blood-parkinsons.md` | `10.3389/fnagi.2022.1010560` | Chen 2022 — Detection of Microbial 16S rRNA Gene in the Blood of Patients with Parkinson's Disease |
| `chen-2022-living-microorganisms-detoxification-heavy-metals.md` | `10.3390/foods11091017` | Potential Application of Living Microorganisms in the Detoxification of Heavy Metals |
| `chen-2024-graves-ra-bidirectional-mr.md` | `10.3389/fendo.2023.1283698` | Graves' Disease and Rheumatoid Arthritis: A Bidirectional Mendelian Randomization Study |
| `chiang-2022-microbiota-gut-brain-axis-dysregulation-parkinsons.md` | `10.3389/fneur.2022.928916` | Chiang 2022 — The Role of the Microbiota-Gut-Brain Axis and Intestinal Microbiome Dysregulation in |
| `choi-2020-16s-blood-microbial-dna-parkinsons.md` | `10.1186/s12974-020-01747-w` | Choi 2020 — Detection of Microbial 16S rRNA Gene in the Blood of Patients with Parkinson's Disease |
| `cilia-2020-microbiome-gut-dietary-interventions-parkinsons.md` | `10.2174/1871527319666200729143555` | Cilia 2020 — Microbiome-Gut-Brain Axis and Dietary Interventions in Parkinson's Disease |
| `critchlow-2025-zinc-metalloprotein-migc-cell-wall-acinetobacter.md` | `10.1371/journal.ppat.1012948` | Critchlow 2025 — The Zinc Metalloprotein MigC Impacts Cell Wall Biogenesis Through Interactions with |
| `cummings-1992-fecal-weight-colon-cancer-fiber.md` | `10.1016/0016-5085(92)91357-A` | Fecal Weight, Colon Cancer Risk, and Dietary Intake of Nonstarch Polysaccharides (Dietary Fiber) |
| `dorsey-2018-parkinsons-incidence-meta-analysis.md` | `10.1212/WNL.0000000000006258` | Dorsey 2018 — The Incidence of Parkinson's Disease: A Systematic Review and Meta-Analysis |
| `elnahas-2005-ckd-global-challenge.md` | `10.1016/S0140-6736(05)17986-7` | El Nahas & Bello 2005 — Chronic Kidney Disease: The Global Challenge |
| `golden-2024-metal-chelation-antibacterial-pseudomonas-acinetobacter.md` | `10.1039/c4cb00175c` | Golden et al. 2024 — Metal Chelation as Antibacterial Strategy Against Pseudomonas and Acinetobacter |
| `harbi-2024-lactobacillus-candida-thyroid-disorders.md` | `10.54633/2333-049-016` | The Occurrence of Lactobacillus and Candida albicans in Patients with Thyroid Disorders |
| `hatton-2022-diet-parkinsons-critical-role-microbiome.md` | `10.3389/fnut.2022.921388` | Hatton 2022 — Diet in Parkinson's Disease: Critical Role for the Microbiome |
| `helmann-2025-labile-metal-pools-bacteria.md` | `10.1021/acs.biochem.4c00684` | Helmann 2025 — Metals in Motion: Understanding Labile Metal Pools in Bacteria |
| `hiremath-2021-zinc-ppd-case-control.md` | `10.7860/JCDR/2021/48341.14649` | Correlation of Serum Zinc Levels with Postpartum Depression - A Case-control Study in North Karnatak |
| `ibrahim-2023-oral-dysbiosis-parkinsons-systematic-review.md` | `10.1080/20002297.2023.2155194` | Ibrahim 2023 — Association Between Oral Dysbiosis and Parkinson's Disease: A Systematic Review |
| `irfan-2017-comparative-heavy-metals-ra.md` | `10.1002/mnfr.202400571` | Comparative Evaluation of Heavy Metals in Patients with Rheumatoid Arthritis and Healthy Control in |
| `islam-2022-metal-toxicity-alzheimers-extensive-review.md` | `10.1038/s44439-024-00009-w` | Exposure of metal toxicity in Alzheimer's disease: An extensive review |
| `jackson-2012-arsenic-infant-formulas-first-foods.md` | `10.1351/PAC-CON-11-07-39` | Arsenic concentration and speciation in infant formulas and first foods |
| `jiang-2021-copper-pcos-meta-analysis.md` | `10.3346/jkms.2021.36.15.e120` | Serum Copper Level and Polycystic Ovarian Syndrome: A Meta-Analysis |
| `jiang-2021-gut-dysbiosis-treg-th17-graves.md` | `10.3389/fcimb.2021.739481` | Gut Dysbiosis Contributes to the Imbalance of Treg and Th17 Cells in Graves' Disease |
| `jiang-2023-gut-microbiome-metabolites-graves.md` | `10.3389/fimmu.2023.1218678` | Gut Microbiome and the Role of Metabolites in the Study of Graves' Disease |
| `keshavarzian-2020-gut-brain-axis-parkinsons-review.md` | `10.3389/fnagi.2020.00313` | Keshavarzian 2020 — The Gut-Brain Axis and Its Relation to Parkinson's Disease: A Review |
| `khalili-2024-mediterranean-diet-later-onset-crohns.md` | `10.1136/gutjnl-2023-331587` | Adherence to a Mediterranean Diet is Associated with a Lower Risk of Later-Onset Crohn's Disease: Re |
| `klann-2022-microbiome-mitochondria-prodromal-parkinsons.md` | `10.3389/fcimb.2021.720390` | Klann 2022 — The Microbiome-Mitochondria Dance in Prodromal Parkinson's Disease |
| `lazarova-2021-graves-disease-epidemiology-risk-factors.md` | `10.1016/j.beem.2023.101800` | Graves' disease: Epidemiology, genetic and environmental risk factors and viruses |
| `li-2025-intestinal-fungi-ckd-heart-failure.md` | `10.12290/xhyxzz.2025-0016` | Exploratory Study on the Impact of Intestinal Fungi on Heart Failure Progression in CKD Patients |
| `liu-2022-heavy-metals-breast-cancer-meta-analysis.md` | `10.3389/fnut.2022.838869` | Relationships Between Biological Heavy Metals and Breast Cancer: A Systematic Review and Meta-Analys |
| `liu-2025-low-concentration-metals-ckd-alpha-klotho.md` | `10.1038/s44439-024-00009-w` | The association between low-concentration heavy metal exposure and chronic kidney disease risk throu |
| `lubomski-2022-gut-dysbiosis-disease-progression-parkinsons.md` | `10.3389/fcimb.2022.875135` | Lubomski 2022 — Progression of Parkinson's Disease Is Associated with Gut Dysbiosis: Two-Year Follo |
| `martinelli-2022-gut-oriented-interventions-ms.md` | `10.26355/eurrev_202202_28007` | Gut-oriented interventions in patients with multiple sclerosis: fact or fiction? |
| `mathew-2025-autism-heterogeneity-gi-inflammation-thesis.md` | `10.26190/unsworks/31488` | Mathew 2025 — Exploring the Spectrum: The Heterogeneity of Autism and Associations with Gastrointest |
| `mcewan-2024-metalloproteome-plasticity-pathogen-adaptation.md` | `10.1042/ETLS20230040` | McEwan 2024 — Metalloproteome Plasticity: A Factor in Bacterial Pathogen Adaptive Responses? |
| `mendelian-randomization-2024-dietary-factors-parkinsons.md` | `10.1080/1028415X.2024.2303950` | 2024 — Correlation Between Dietary Factors and Parkinson's Disease Revealed by Mendelian Randomizat |
| `meta-analysis-parkinsons-incidence-systematic-review.md` | `10.1007/s00415-021-10855-z` | Ou 2021 — The Incidence of Parkinson's Disease: A Systematic Review and Meta-Analysis |
| `mishra-2022-molecular-mechanisms-heavy-metals-ckd.md` | `10.3390/ijms23063997` | Molecular Mechanisms of Cellular Injury and Role of Toxic Heavy Metals in Chronic Kidney Disease |
| `moon-2024-physiological-cost-antibiotic-resistance-ribosome-magnesium.md` | `10.1126/sciadv.adq5817` | Moon 2024 — Physiological Cost of Antibiotic Resistance: Insights from a Ribosome Variant in Bacteri |
| `mr-2024-gut-microbiome-parkinsons-metagenomics.md` | `10.3389/fnins.2024.1372740` | 2024 — Exploring the Gut Microbiota-Parkinson's Disease Link: Preliminary Insights from Metagenomic |
| `mr-2024-gut-microbiota-cognitive-impairment-parkinsons.md` | `10.3389/fmicb.2024.1445325` | 2024 — Effects of Gut Microbiota on Cognitive Impairment in Parkinson's Disease: A Comprehensive Me |
| `nishiwaki-2020-16s-gut-microbiota-parkinsons-eastern-europe.md` | `10.1186/s12866-020-01893-2` | Nishiwaki 2020 — Exploring Gut Microbiota Alterations in Parkinson's Disease: Insights from a 16S A |
| `palacios-2022-comorbidities-parkinsons-microbiome.md` | `10.1016/S1474-4422(22)00044-2` | Palacios 2022 — Biological and Clinical Implications of Comorbidities in Parkinson's Disease |
| `pendergrass-2025-dysbiosis-dyshomeostasis-parkinsons-metallomic.md` | `10.5281/zenodo.18068369` | Pendergrass 2025 — From Dysbiosis to Dyshomeostasis: Why Parkinson's Requires a Metallomic–Microbiom |
| `pendergrass-2026-age-window-vulnerability-vegetable-baby-foods.md` | `10.5281/zenodo.18366816` | Age-Window Metabolic and Toxicokinetic Vulnerability in Vegetable-Based Baby Foods: Separating Devel |
| `pendergrass-2026-certification-infant-food-metals.md` | `10.5281/zenodo.18905821` | Certification as a Framework for Reducing Heavy Metal Exposure in Infant and Child Foods: Integratin |
| `pendergrass-2026-counterproductive-expose-testing.md` | `10.5281/zenodo.19470572` | The Counterproductive Consequences of Public Exposé Testing: How Unstructured Disclosure Undermines |
| `pendergrass-2026-fertilizers-heavy-metals-historical.md` | `10.5281/zenodo.18439158` | Heavy Metals in Fertilizers: A Historical Analysis of Contamination Trends (1960-2025) |
| `pendergrass-2026-heavy-metals-obesity-epidemic.md` | `10.5281/zenodo.18434951` | Heavy Metals, Microbial Metallomics, and the US Obesity Epidemic: A Mechanistic Examination of a Pop |
| `pendergrass-2026-microbial-metallomics-parkinsons-ferroptosis.md` | `10.5281/zenodo.17830083` | Microbial Metallomics and Parkinson's Disease: A Unified Metal-Driven Framework Linking Ferroptosis, |
| `pendergrass-2026-nickel-nec-preterm-gut.md` | `10.5281/zenodo.18200348` | Nickel as a Catalytic Driver of Necrotizing Enterocolitis: Dietary Nickel, Microbial Metallomics, an |
| `pendergrass-2026-pheomelanin-neuromelanin-parkinsons-redheads.md` | `10.5281/zenodo.17976306` | Pheomelanin, Eumelanin, and Neuromelanin: A Metal-Linked Hypothesis for Parkinson's Risk in Redheads |
| `perez-pardo-2018-microbiome-therapies-parkinsons.md` | `10.2174/1381612824666180928100928` | Perez-Pardo 2018 — Microbiome-Based Therapies for Parkinson's Disease |
| `perez-pardo-2022-toll-like-receptors-parkinsons-microbiome-gut-brain.md` | `10.3389/fimmu.2022.1154626` | Perez-Pardo 2022 — How Toll-Like Receptors Influence Parkinson's Disease in the Microbiome-Gut-Brai |
| `petzold-2010-oct-ms-systematic-review-meta-analysis.md` | `10.1136/jnnp-2010-219576` | A systematic review and meta-analysis of optical coherence tomography in multiple sclerosis |
| `phillips-2022-ketogenic-diet-feasibility-parkinsons.md` | `10.1038/s41531-022-00295-y` | Phillips 2022 — A Mixed Methods Feasibility Study of a Ketogenic Diet as Treatment for Parkinson's |
| `plassais-2024-16s-amplicon-sequencing-parkinsons-eastern-europe.md` | `10.3389/fmicb.2024.1369880` | Plassais 2024 — Exploring Gut Microbiota Alterations in Parkinson's Disease: Insights from a 16S Am |
| `pourmirzaiee-2024-ppd-magnesium-infant-development.md` | `10.4103/ijpvm.ijpvm_131_23` | Association of Postpartum Depression with Maternal Serum Magnesium Levels, Infant Growth, and Neurod |
| `prkacin-2021-probiotics-fiber-rich-diets-ckd-progression.md` | `10.20471/acc.2021.60.s1.16` | Prkacin et al. 2021 — Probiotics and High Fiber-Rich Diets Have Anti-Inflammatory Properties and Dec |
| `puszkarz-2018-food-nutrition-hashimotos-prevention.md` | `10.5281/zenodo.1320419` | Role of Food and Nutrition in Pathogenesis and Prevention of Hashimoto's Thyroiditis |
| `rajdl-2005-oxidative-stress-diabetic-mothers-infants-delivery.md` | `10.33549/physiolres.010612` | Rajdl 2005 — Markers of Oxidative Stress in Diabetic Mothers and Their Infants During Delivery |
| `rohaun-2024-microbes-strategic-metalation-mononuclear-enzymes.md` | `10.1073/pnas.2403042121` | Rohaun 2024 — Microbes Vary Strategically in Their Metalation of Mononuclear Enzymes |
| `romano-2021-microbiome-host-interactions-alzheimers.md` | `10.3389/fphar.2021.652726` | Romano 2021 — The Role of Microbiome-Host Interactions in the Development of Alzheimer's Disease |
| `rosario-2019-constraint-based-modelling-microbiome-cometabolism-parkinsons.md` | `10.1186/s40168-019-0669-3` | Rosario 2019 — Constraint-Based Modelling of Host-Microbiome Co-Metabolism in Alzheimer's and Parki |
| `roussin-2020-gut-microbiota-pathophysiology-asd.md` | `10.3390/microorganisms8071605` | Roussin 2020 — Role of Gut Microbiota in ASD Pathophysiology: Clinical and Preclinical Evidence |
| `schiavino-2006-oral-hyposensitization-nickel.md` | `10.1177/039463200601900120` | A Clinical Trial of Oral Hyposensitization in Systemic Allergy to Nickel |
| `serum-metabolomics-motor-progression-parkinsons.md` | `10.3233/JPD-181424` | Willkommen 2018 — Serum Metabolomics of Slow vs. Rapid Motor Progression Parkinson's Disease: A Pil |
| `slattery-2016-enteric-ecosystem-disruption-asd.md` | `10.2174/1381612822666160905122404` | Slattery 2016 — Enteric Ecosystem Disruption in Autism Spectrum Disorder: Can the Microbiota and Ma |
| `sugimoto-2024-zinc-deficiency-cancer-review.md` | `10.1007/s12011-024-04062-w` | Zinc Deficiency as a General Feature of Cancer: A Review of the Literature |
| `sullivan-2024-resisting-death-metal-cuzn-homeostasis-bacteria.md` | `10.1042/ETLS20230040` | Sullivan 2024 — Resisting Death by Metal: Metabolism and Cu/Zn Homeostasis in Bacteria |
| `thoma-2011-bv-dietary-indices.md` | `10.3945/jn.110.128181` | Bacterial Vaginosis Is Associated with Variation in Dietary Indices |
| `tsushima-2024-ketogenic-diet-pcos-fertility.md` | `10.3389/fnut.2024.1450244` | Ketogenic diet improves fertility in patients with polycystic ovary syndrome: a brief report |
| `vogt-2024-hfq-srna-rust-iron-starvation-caulobacter.md` | `10.1128/mbio.01234-24` | Vogt 2024 — Genome-Wide Profiling of Hfq-Bound RNAs Reveals the Iron-Responsive Small RNA RusT in Ca |
| `wang-2018-inflammatory-cytokines-peritoneal-flora-endometriosis-infertility.md` | `10.26355/eurrev_201804_14826` | Inflammatory cytokines IL-6, IL-10, IL-13, TNF-alpha and peritoneal fluid flora were associated with |
| `wei-2020-oxidative-stress-parkinsons-meta-analysis.md` | `10.3389/fnmol.2020.00236` | Wei 2020 — Oxidative Stress in Parkinson's Disease: A Systematic Review and Meta-Analysis |
| `wei-2022-oxidative-stress-parkinsons-meta-analysis.md` | `10.3389/fnmol.2022.1039447` | Wei 2022 — Oxidative Stress in Parkinson's Disease: A Systematic Review and Meta-Analysis |
| `weis-2022-altered-gut-microbiome-lps-alpha-synuclein-parkinsons.md` | `10.3389/fnins.2021.726708` | Weis 2022 — Altered Gut Microbiome in Parkinson's Disease and the Influence of Lipopolysaccharide i |
| `zhang-2023-arsenic-fluoride-learning-memory-microbiome-metabolome.md` | `10.3967/bes2023.028` | Zhang 2023 — Mechanism of Learning and Memory Impairment in Rats Exposed to Arsenic and/or Fluoride |
| `zheng-2024-znta-zinc-cadmium-homeostasis-vibrio-parahaemolyticus.md` | `10.1080/19490976.2024.2327403` | Zheng 2024 — ZntA Maintains Zinc and Cadmium Homeostasis and Promotes Oxidative Stress Resistance an |
| `zytnick-2024-methylolanthanin-lanthanide-metallophore-methylobacterium.md` | `10.1073/pnas.2321658121` | Zytnick 2024 — Identification and Characterization of a Small-Molecule Metallophore Involved in Lant |
DOI resolves — but to the wrong title
| File | Stored DOI | Stored title | Crossref title | Similarity |
|---|---|---|---|---|
| `Russell2023-comorbidities-multimorbidity-covid.md` | `10.1038/s41591-022-02156-9` | Russell, Lone, Baillie 2023 — Comorbidities, multimorbidity and COVID-19 | Comorbidities, multimorbidity and COVID-19 | 0.43 |
| `ahlstrom-2019-nickel-allergy-review.md` | `10.1111/cod.13272` | Nickel Allergy and Allergic Contact Dermatitis: A Clinical Review | Response to: Positive reactions to gold sodium thiosulfate in patch test panels | 0.00 |
| `alotaibi-2021-heavy-metal-detoxification-bacillus-bioremediation.md` | `10.3390/microorganisms9081574` | Alotaibi 2021 — Unraveling the Underlying Heavy Metal Detoxification Mechanisms | Deciphering Bacterial Community Structure, Functional Prediction and Food Safety | 0.00 |
| `autoimmune-2023-perturbations-gut-microbiota-neurological.md` | `10.1016/j.autrev.2023.103452` | 2023 — Perturbations in Gut Microbiota Composition in Patients with Autoimmune | Understanding, diagnosing, and treating Myalgic encephalomyelitis/chronic fatigu | 0.00 |
| `azizi-2017-systematic-review-drug-therapy-graves.md` | `10.1530/EJE-16-0888` | A systematic review of drug therapy for Graves' hyperthyroidism | MANAGEMENT OF ENDOCRINE DISEASE: Congenital adrenal hyperplasia due to 21-hydrox | 0.00 |
| `bakulski-2025-heavy-metals-late-onset-alzheimers.md` | `10.1002/alz.71075` | Contributions of heavy metal exposure to late-onset Alzheimer's disease | Exposure to lead and incidence of Alzheimer's disease and all‐cause dementia in | 0.33 |
| `balestrino-2020-systematic-review-parkinsons-basal-ganglia.md` | `10.1111/ene.14108` | Balestrino 2020 — Parkinson's Disease: A Systematic Review | Parkinson disease | 0.33 |
| `bergman-2016-low-nickel-diet-review.md` | `10.4172/2155-9554.1000356` | Low Nickel Diet: A Patient-Centered Review | Somatic Mosaicism in Blaschkolinear Inflammatory Disorders | 0.00 |
| `bheemanenni-2025-fibromyalgia-ibs-systematic-review.md` | `10.7759/cureus.96801` | Bheemanenni 2025 — Fibromyalgia and IBS (Systematic Review) | Unraveling the Association Between Fibromyalgia and Irritable Bowel Syndrome: A | 0.33 |
| `boertien-2019-microbiome-composition-covariates-parkinsons.md` | `10.3389/fneur.2019.01174` | Boertien 2019 — Changes in Gastrointestinal Microbiome Composition in PD: A Piv | Differential Impact of Plasma Homocysteine Levels on the Periventricular and Sub | 0.00 |
| `borghini-2020-endometriosis-nickel-ibs.md` | `10.3390/nu12082277` | Irritable Bowel Syndrome-Like Disorders in Endometriosis: Prevalence of Nickel S | Beneficial Effects of a Low-Nickel Diet on Relapsing IBS-Like and Extraintestina | 0.20 |
| `brock-2015-selenium-thyroid-autoimmunity.md` | `10.14200/jrm.2015.4.0104` | The Role of Selenium in Thyroid Autoimmunity: A Review | Synergy in Herbal Medicines: Part 1 | 0.00 |
| `brown-2011-gut-metagenomics-t1d-autoimmunity-model.md` | `10.1371/journal.pone.0025792` | Brown et al. 2011 — Gut Metagenomics and Functional Model of T1D Autoimmunity | Gut Microbiome Metagenomics Analysis Suggests a Functional Model for the Develop | 0.40 |
| `cai-2022-gut-microbiota-male-reproduction.md` | `10.3389/fmicb.2022.977574` | Cai 2022 — Gut Microbiota and Male Reproduction | Gut microbiota supports male reproduction via nutrition, immunity, and signaling | 0.43 |
| `cameron-2011-nickel-genotoxicity-carcinogenicity.md` | `10.1515/reveh.2011.012` | Cameron 2011 — Nickel Genotoxicity and Carcinogenicity | Exploring the molecular mechanisms of nickel-induced genotoxicity and carcinogen | 0.33 |
| `campos-acuna-2019-neuroinflammation-microbiome-immune-parkinsons.md` | `10.1186/s12974-019-1528-y` | Campos-Acuna 2019 — Microbiome-Driven Neuroinflammation and Immune Response in | Altered gut microbiota and inflammatory cytokine responses in patients with Park | 0.20 |
| `capdevila-2024-bacterial-metallostasis-sensing-trafficking.md` | `10.1021/acs.chemrev.4c00132` | Capdevila 2024 — Bacterial Metallostasis: Metal Sensing, Metalloproteome Remodel | Regioselective Substitution of BINOL | 0.00 |
| `carrero-2020-plant-based-diets-ckd-nature-reviews.md` | `10.1038/s41581-020-0297-2` | Carrero et al. 2020 — Plant-Based Diets in CKD | Plant-based diets to manage the risks and complications of chronic kidney diseas | 0.33 |
| `caruffo-2020-deferiprone-nutritional-immunity-piscirickettsia.md` | `10.1186/s13567-020-00845-2` | Caruffo et al. 2020 — Deferiprone as Assisted Nutritional Immunity Against Pisci | Pharmacological iron-chelation as an assisted nutritional immunity strategy agai | 0.45 |
| `carvalho-2014-siderophores-trojan-horses-mdr.md` | `10.3389/fmicb.2014.00290` | de Carvalho & Fernandes 2014 — Siderophores as Trojan Horses Against MDR Pathoge | Siderophores as “Trojan Horsesâ€: tackling multidrug resistance? | 0.38 |
| `casaburi-2022-formate-nec-enteric-dysbiosis-metabolic-model.md` | `10.3389/fped.2022.893059` | Casaburi 2022 — Formate as a metabolic driver of NEC: integrated metagenomics an | Metabolic model of necrotizing enterocolitis in the premature newborn gut result | 0.10 |
| `chandrangsu-2016-zinc-intoxication-perr-heme-toxicity.md` | `10.1371/journal.pgen.1006515` | Chandrangsu & Helmann 2016 — Intracellular Zn Intoxication Mis-metalates PerR, C | Intracellular Zn(II) Intoxication Leads to Dysregulation of the PerR Regulon Res | 0.42 |
| `chapman-2026-clostridia-hmos-pathobiont-suppression-nec.md` | `10.1038/s41564-026-02297-4` | Chapman 2026 — Non-toxigenic Clostridia Metabolize HMOs and Suppress Pathobionts | Clostridia from preterm infants metabolize human milk oligosaccharides to suppre | 0.29 |
| `chen-2022-beta-glucan-masking-signaling-pathways-candida.md` | `10.3389/ffunb.2022.842501` | Chen, Wagner & Reynolds 2022 — Beta-Glucan Masking Signaling Pathways in Candida | When Is It Appropriate to Take Off the Mask? Signaling Pathways That Regulate ß( | 0.33 |
| `chen-2024-esophageal-microbial-dysbiosis-tlr2-gerd.md` | `10.1186/s12967-024-05878-1` | Chen 2024 — Esophageal Microbial Dysbiosis and TLR2 Signaling in GERD | Esophageal microbial dysbiosis impairs mucosal barrier integrity via toll-like r | 0.19 |
| `chen-2024-indoles-microbiome-parkinsons.md` | `10.1038/s41598-025-99534-3` | Chen 2025 — Indole Metabolites and Gut Microbiome in Parkinson's Disease | Therapeutic mechanistic study of novel indole derivatives as SIRTUIN3 modulators | 0.23 |
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DOI resolves, title matches, but authors differ
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|---|---|---|---|
| `Bernard-Raichon2022-dysbiosis-translocation-bacteremia-covid 2.md` | `10.1038/s41467-022-33395-6` | Lucie Bernard-Raichon, Mericien Venzon, Jon Klein | Bernard-Raichon Lucie, Venzon Mericien, Klein Jon |
| `Chen2023-gut-microbiota-inflammatory-mendelian-covid.md` | `10.3389/fimmu.2024.1406291` | Yuling Chen, Chang Chen | Chen Yuling, Chen Chang |
| `Ibrahim2021-metformin-covid-review.md` | `10.3389/fendo.2021.587801` | Sherehan Ibrahim, Jamie R. Lowe, Carolyn T. Bramante | Ibrahim Sherehan, Lowe Jamie R., Bramante Carolyn T. |
| `Ke2022-microbiome-covid-metagenome-genomes 2.md` | `10.1038/s41467-022-32991-w` | Shanlin Ke, Scott T. Weiss, Yang-Yu Liu | Ke Shanlin, Weiss Scott T., Liu Yang-Yu |
| `Li2023-genetic-causal-gut-microbiome-covid.md` | `10.3389/fimmu.2023.1217615` | Zengbin Li, Guixian Zhu, Xiangye Lei | Li Zengbin, Zhu Guixian, Lei Xiangye |
| `abdollahpour-2026-lactobacillus-casei-ppd-rct.md` | `10.1186/s12888-025-07658-7` | Derakhshan Abdollahpour, Aziz Homayouni-Rad, Roghaiyeh Nourizadeh | Abdollahpour Derakhshan, Homayouni-Rad Aziz, Nourizadeh Roghaiyeh |
| `abedi-2023-arsenic-mercury-hen-eggs-iran.md` | `10.1186/s12889-023-16223-4` | Abdol-samad Abedi, Hedayat Hoseini, Fatemeh Mohammadi-Nasrabadi | Abedi Abdol-samad, Hoseini Hedayat, Mohammadi-Nasrabadi Fatemeh |
| `abudawood-2021-antioxidant-heavy-metals-pcos.md` | `10.1038/s41598-021-02120-6` | Manal Abudawood, Hajera Tabassum, Atheer H. Alanazi | Abudawood Manal, Tabassum Hajera, Alanazi Atheer H. |
| `abuqwider-2023-gut-microbiome-blood-glucose-t1d-systematic-review.md` | `10.3389/fendo.2023.1265696` | Jumana Abuqwider, Alessandra Corrado, Giuseppe Scida | Abuqwider Jumana, Corrado Alessandra, Scidà Giuseppe |
| `adhikari-2024-leafy-vegetables-heavy-metals-johannesburg.md` | `10.1007/s10661-023-12283-6` | Sutapa Adhikari, Madeleen Struwig | Adhikari Sutapa, Struwig Madeleen |
| `afroz-2021-high-salt-diet-microbiome-autism-behavior-mice.md` | `10.1038/s41598-021-87678-x` | Kazi Farhana Afroz, Noah Reyes, Kobe Young | Afroz Kazi Farhana, Reyes Noah, Young Kobe |
| `agagunduz-2023-dietary-lipids-lipidomics-gut-brain-t2d.md` | `10.1186/s12967-023-04088-5` | Duygu Agagunduz, Mehmet Arif Icer, Ozge Yesildemir | Ağagündüz Duygu, Icer Mehmet Arif, Yesildemir Ozge |
| `agrawal-2022-risk-factors-ppd.md` | `10.7759/cureus.30898` | Iris Agrawal, Ashok M. Mehendale, Ritika Malhotra | Agrawal Iris, Mehendale Ashok M, Malhotra Ritika |
| `ahmed-2021-microbiome-precision-psychiatry-ethical-challenges.md` | `10.1080/21507740.2021.1958096` | Eman Ahmed, Kristien Hens | Ahmed Eman, Hens Kristien |
| `ahmed-2024-infections-inflammation-schizophrenia-review.md` | `10.1186/s43045-024-00397-7` | Gellan K Ahmed, Haidi Karam-Allah Ramadan, Khaled Elbeh | Ahmed Gellan K., Ramadan Haidi Karam-Allah, Elbeh Khaled |
| `aho-2021-gut-microbiome-scfas-inflammation-parkinsons.md` | `10.1186/s13024-021-00427-6` | Velma T E Aho, Madelyn C Houser, Pedro A B Pereira | Aho Velma T. E., Houser Madelyn C., Pereira Pedro A. B. |
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| `almeida-2023-gut-microbiota-cardiovascular-axis.md` | `10.3389/fgstr.2023.1235126` | Catia Almeida, J. Guilherme Goncalves-Nobre, Diogo Alpuim Costa | Almeida Cátia, Gonçalves-Nobre J. Guilherme, Alpuim Costa Diogo |
| `alobaidi-2025-gut-kidney-axis-ckd-mechanisms-therapeutics.md` | `10.3389/fmed.2025.1675458` | Sami Alobaidi | Alobaidi Sami |
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| `yuan-2022-functional-metabolic-alterations-gut-microbiota-new-onset-t1d.md` | `10.1038/s41467-022-33656-4` | Xiaoxiao Yuan, Ruirui Wang, Bing Han | Yuan Xiaoxiao, Wang Ruirui, Han Bing |
| `yuan-2025-gut-viral-communities-asd-healthy-children.md` | `10.3389/fcimb.2025.1660970` | Minli Yuan, Qiuxia Wang, Yan Lu | Yuan Minli, Wang Qiuxia, Lu Yan |
| `yuan-2025-purpureocillium-amino-acid-metabolism-cognitive-schizophrenia.md` | `10.1186/s12888-025-06965-3` | Xiuxia Yuan, Xue Li, Lijuan Pang | Yuan Xiuxia, Li Xue, Pang Lijuan |
| `zahoor-2021-metabolomics-ms-comprehensive-overview.md` | `10.1007/s00018-020-03733-2` | Insha Zahoor, Bin Rui, Junaid Khan | Zahoor Insha, Rui Bin, Khan Junaid |
| `zangeneh-2025-probiotics-ms-systematic-review-meta-analysis.md` | `10.1371/journal.pone.0319755` | Zahra Zangeneh, Mosayeb Rostamian, Hamid Motamedi | Zangeneh Zahra, Rostamian Mosayeb, Motamedi Hamid |
| `zarimeidani-2025-gut-microbiota-neuroinflammation-asd-pathogenesis.md` | `10.1007/s10753-024-02061-y` | Fatemeh Zarimeidani, Rahem Rahmati, Mehrnaz Mostafavi | Zarimeidani Fatemeh, Rahmati Rahem, Mostafavi Mehrnaz |
| `zelante-2024-microbial-ahr-ligand-3iald-tolerogenic-ms.md` | `10.1038/s41598-024-57400-8` | Teresa Zelante, Giuseppe Paolicelli, Francesca Fallarino | Zelante Teresa, Paolicelli Giuseppe, Fallarino Francesca |
| `zeng-2018-socioeconomic-status-ckd-meta-analysis.md` | `10.1136/jech-2017-209815` | Xiaoxi Zeng, Jing Liu, Sibei Tao | Zeng Xiaoxi, Liu Jing, Tao Sibei |
| `zeng-2023-gut-microbiome-epilepsy-mendelian-randomization.md` | `10.3389/fmicb.2023.1115014` | Youjie Zeng, Si Cao, Heng Yang | Zeng Youjie, Cao Si, Yang Heng |
| `zeng-2024-probiotics-asd-meta-analysis.md` | `10.1186/s13052-024-01692-z` | Ping Zeng, Cheng-zhi Zhang, Zhi-xing Fan | Zeng Ping, Zhang Cheng-zhi, Fan Zhi-xing |
| `zerbo-2015-maternal-infection-pregnancy-asd.md` | `10.1007/s10803-013-2016-3` | Ousseny Zerbo, Yinge Qian, Cathleen Yoshida | Zerbo Ousseny, Qian Yinge, Yoshida Cathleen |
| `zhang-2008-ckd-prevalence-population-systematic-review.md` | `10.1186/1471-2458-8-117` | Qiu-Li Zhang, Dietrich Rothenbacher | Zhang Qiu-Li, Rothenbacher Dietrich |
| `zhang-2019-nickel-congenital-heart-defects.md` | `10.1097/MD.0000000000015352` | Zhang N, Chen W, Dong Y | Zhang Nannan, Chen Ming, Li Jun |
| `zhang-2020-gut-microbiota-diversity-gestation-ppd.md` | `10.21203/rs.3.rs-91665/v1` | Xiaoyan Zhang, Qiangsheng Gan, Hongling Yang | Zhang Xiaoyan, Gan Qiangsheng, Yang Hongling |
| `zhang-2021-antidepressants-fluoxetine-amitriptyline-gut-microbiome.md` | `10.1038/s41398-021-01254-5` | Weijie Zhang, Wan Qu, Hua Wang | Zhang Weijie, Qu Wan, Wang Hua |
| `zhang-2021-antidepressants-fluoxetine-amitriptyline-gut-microbiota.md` | `10.1038/s41398-021-01254-5` | Weijie Zhang, Wan Qu, Hua Wang | Zhang Weijie, Qu Wan, Wang Hua |
| `zhang-2021-cadmium-gut-liver-axis-alzheimers-mouse.md` | `10.1038/s42003-021-02898-1` | Angela Zhang, Megumi Matsushita, Liang Zhang | Zhang Angela, Matsushita Megumi, Zhang Liang |
| `zhang-2021-fluoxetine-amitriptyline-gut-microbiota-cums-rats.md` | `10.1038/s41398-021-01254-5` | Weijie Zhang, Wan Qu, Hua Wang | Zhang Weijie, Qu Wan, Wang Hua |
| `zhang-2022-causal-gut-microbiome-cvd-mr.md` | `10.3389/fcvm.2022.971376` | Yuxuan Zhang, Xinyi Zhang, Delong Chen | Zhang Yuxuan, Zhang Xinyi, Chen Delong |
| `zhang-2022-causal-microbiome-cvd-mendelian-randomization.md` | `10.3389/fcvm.2022.971376` | Yuxuan Zhang, Xinyi Zhang, Delong Chen | Zhang Yuxuan, Zhang Xinyi, Chen Delong |
| `zhang-2022-gut-dysbiosis-pancreatic-diseases-therapeutic-target.md` | `10.3389/fnut.2022.814269` | Tao Zhang, Guangqi Gao, Hafiz Arbab Sakandar | Zhang Tao, Gao Guangqi, Sakandar Hafiz Arbab |
| `zhang-2022-lactiplantibacillus-fermented-milk-vpa-asd-mice.md` | `10.3389/fnut.2022.1005308` | Yilin Zhang, Min Guo, Hongfa Zhang | Zhang Yilin, Guo Min, Zhang Hongfa |
| `zhang-2022-metagenomic-crosstalk-microbiota-glucose-drugs-t2d.md` | `10.1007/s00125-022-05768-5` | Xiuying Zhang, Huahui Ren, Cuiling Zhao | Zhang Xiuying, Ren Huahui, Zhao Cuiling |
| `zhang-2023-gut-microbiota-pathogenesis-treatment-ppd-review.md` | `10.1186/s12991-023-00469-8` | Sheng Zhang, Baili Lu, Gang Wang | Zhang Sheng, Lu Baili, Wang Gang |
| `zhang-2023-metagenome-wide-esrd-gut-microbial-signatures.md` | `10.1186/s13059-023-03056-y` | Pan Zhang, Xifan Wang, Shenghui Li | Zhang Pan, Wang Xifan, Li Shenghui |
| `zhang-2024-bile-acid-metabolism-diabetic-kidney-disease.md` | `10.1038/s41387-024-00315-0` | Qing Zhang, Liqian Lu, Jiao Wang | Zhang Qing, Lu Liqian, Wang Jiao |
| `zhang-2024-blood-metabolites-gut-microbiota-ovarian-cancer-mr.md` | `10.3389/fcimb.2024.1451880` | Li Zhang, Ting Cao, Kunhong Liu | Zhang Liang, Cao Tao, Liu Kang |
| `zhang-2024-gut-microbiota-ppd-mendelian-randomization.md` | `10.3389/fpsyt.2024.1282742` | Jianjun Zhang, Lechuan Wei, Hongfei Tan | Zhang Jianjun, Wei Lechuan, Tan Hongfei |
| `zhang-2024-mendelian-randomization-ppd.md` | `10.3389/fpsyt.2024.1282742` | Jianjun Zhang, Lechuan Wei, Hongfei Tan | Zhang Jianjun, Wei Lechuan, Tan Hongfei |
| `zhang-2024-ovarian-cancer-microbiome-inflammatory-microenvironment.md` | `10.3389/fcimb.2024.1440742` | Min Zhang, Jiao Mo, Wei Huang | Zhang Min, Mo Jiahang, Huang Wu |
| `zhang-2024-taxonomic-functional-gut-microbiota-ckd-16s.md` | `10.3389/fcimb.2024.1363276` | Yangyang Zhang, Weicong Zhong, Wenting Liu | Zhang Yangyang, Zhong Weicong, Liu Wenting |
| `zhang-2025-fmt-promising-therapy-kidney-diseases.md` | `10.3389/fmed.2025.1628722` | Jiawei Zhang, Xiangge Ren, Bing Li | Zhang Jiawei, Ren Xiangge, Li Bing |
| `zhang-2025-gut-microbiota-anxiety-depression-multimodal.md` | `10.3389/fmicb.2025.1664800` | Zhang Ruohan, Wang Ruting, Wu Hongxi | Ruohan Zhang, Ruting Wang, Hongxi Wu |
| `zhang-2025-gut-microbiota-metabolites-asd-network-pharmacology.md` | `10.1038/s41598-025-15921-w` | Fushen Zhang, Weiye Xu, Qian Tang | Zhang Fushen, Xu Weiye, Tang Qian |
| `zhang-2025-gut-virome-premalignant-colorectal-adenoma.md` | `10.1186/s12967-025-06404-7` | Pan Zhang, Xiaofeng Tuo, Jiong Jiang | Zhang Pan, Tuo Xiaofeng, Jiang Jiong |
| `zhang-2026-metagenomic-gut-microbiome-diabetes-mi.md` | `10.1007/s00592-026-02648-x` | Honghong Zhang, Changlin Zhai, Huilin Hu | Zhang Honghong, Zhai Changlin, Hu Huilin |
| `zhang-2026-metagenomic-gut-microbiome-t2d-myocardial-infarction.md` | `10.1007/s00592-026-02648-x` | Honghong Zhang, Changlin Zhai, Huilin Hu | Zhang Honghong, Zhai Changlin, Hu Huilin |
| `zhao-2021-colorectal-cancer-microbiome-patterns-signatures.md` | `10.3389/fgene.2021.787176` | Lan Zhao, William C. Cho, Mark R. Nicolls | Zhao Lan, Cho William C., Nicolls Mark R. |
| `zhao-2023-altered-gut-microbiota-biomarkers-asd-early-childhood.md` | `10.1016/j.neuroscience.2023.04.029` | Yingxin Zhao, Yaping Wang, Fanchao Meng | Zhao Yingxin, Wang Yaping, Meng Fanchao |
| `zhao-2025-early-life-microbiota-dysbiosis-asd-parkinsons-link.md` | `10.1038/s41380-025-03281-w` | Ming-Ming Zhao, Kenji Hashimoto, Jian-Jun Yang | Zhao Ming-Ming, Hashimoto Kenji, Yang Jian-Jun |
| `zhao-2025-intestinal-fungal-microbiota-acute-pancreatitis.md` | `10.1186/s13099-024-00675-z` | Meng-Qi Zhao, Miao-Yan Fan, Meng-Yan Cui | Zhao Meng-Qi, Fan Miao-Yan, Cui Meng-Yan |
| `zhen-2023-tmao-cardiovascular-diseases-review.md` | `10.3389/fendo.2023.1085041` | Jing Zhen, Zhou Zhou, Meng He | Zhen Jing, Zhou Zhou, He Meng |
| `zheng-2017-neuroactive-amino-acids-asd-review.md` | `10.1007/s00726-016-2332-y` | Hui-Fei Zheng, Wen-Qiang Wang, Xin-Min Li | Zheng Hui-Fei, Wang Wen-Qiang, Li Xin-Min |
| `zheng-2018-dietary-fiber-ovarian-cancer-risk-meta-analysis.md` | `10.1186/s12937-018-0407-1` | Bin Zheng, Hong Shen, Huan Han | Zheng Bowen, Shen Hui, Han Hedong |
| `zheng-2021-bacterial-aromatic-amino-acids-asd.md` | `10.3389/fnins.2021.738220` | Yuanpeng Zheng, Marie K. Bek, Naika Z. Prince | Zheng Yuanpeng, Bek Marie K., Prince Naika Z. |
| `zheng-2023-fmt-919-syrup-erucamide-5avab-ppd.md` | `10.3389/fimmu.2023.1203015` | Qiaoqi Zheng, Shusheng Wang, Xinyun Tian | Zheng Qiaoqi, Wang Shusheng, Tian Xinyun |
| `zhi-2026-gut-mycobiome-membranous-nephropathy.md` | `10.1038/s41598-026-38437-3` | Yingxin Zhi, Yukun Zhou, Mengxiao Wang | Zhi Yingxin, Zhou Yukun, Wang Mengxiao |
| `zhong-2023-causal-effects-gut-microbiome-covid-19-mendelian-randomization.md` | `10.3389/fimmu.2023.1173974` | Meng-Mei Zhong, Jia-Hao Xie, Yao Feng | Zhong Meng-Mei, Xie Jia-Hao, Feng Yao |
| `zhou-2010-quercetin-pancreatic-cancer-stem-cells.md` | `10.3892/ijo_00000704` | Wei Zhou, Georgios Kallifatidis, Bernd Baumann | Herr |
| `zhou-2020-fecal-microbiota-ppd.md` | `10.3389/fcimb.2020.567268` | Yumei Zhou, Chen Chen, Haibo Yu | Zhou Yumei, Chen Chen, Yu Haibo |
| `zhou-2020-postpartum-microbiota.md` | `10.3389/fcimb.2020.567268` | Yumei Zhou, Chen Chen, Haibo Yu | Zhou Yumei, Chen Chen, Yu Haibo |
| `zhou-2021-fecal-microbiota-pdac-autoimmune-pancreatitis-metagenomics.md` | `10.1186/s12967-021-02882-7` | Wenli Zhou, De Zhang, Zhengpeng Li | Zhou Wenli, Zhang De, Li Zhengpeng |
| `zhou-2022-host-microbiome-protein-interactions-disease-pathways.md` | `10.1186/s13059-022-02643-9` | Hao Zhou, Juan Felipe Beltran, Ilana Lauren Brito | Zhou Hao, Beltrán Juan Felipe, Brito Ilana Lauren |
| `zhou-2022-host-microbiome-protein-protein-interactions-disease.md` | `10.1186/s13059-022-02643-9` | Hao Zhou, Juan Felipe Beltran, Ilana Lauren Brito | Zhou Hao, Beltrán Juan Felipe, Brito Ilana Lauren |
| `zhou-2023-fecal-microbiota-acupuncture-ppd.md` | `10.3389/fcimb.2023.1228940` | Yu-Mei Zhou, Jin-Jun Yuan, Yu-Qin Xu | Zhou Yu-Mei, Yuan Jin-Jun, Xu Yu-Qin |
| `zhou-2024-gut-microbiome-schizophrenia-mendelian-randomization.md` | `10.1038/s41537-024-00497-7` | Keer Zhou, Ancha Baranova, Hongbao Cao | Zhou Keer, Baranova Ancha, Cao Hongbao |
| `zhou-2024-maternal-ppd-infant-neurodevelopment-gut-microbiota.md` | `10.3389/fpsyt.2024.1385229` | Lepeng Zhou, Linghong Tang, Chuhui Zhou | Zhou Lepeng, Tang Linghong, Zhou Chuhui |
| `zhou-2025-gut-microbiota-immune-nervous-system-asd.md` | `10.3389/fmicb.2025.1535455` | Min Zhou, Baoming Niu, Jiarui Ma | Zhou Min, Niu Baoming, Ma Jiarui |
| `zhou-2025-heavy-metals-essential-minerals-hair-asd-severity.md` | `10.1007/s12011-025-04588-z` | Xulan Zhou, Xiaochun Xia, Liming Li | Zhou Xulan, Xia Xiaochun, Li Liming |
| `zhou-liu-2024-heavy-metals-dried-chili-guizhou.md` | `10.1038/s41598-024-68564-8` | Li-qiang Zhou, Wen-zheng Liu | Zhou Li-qiang, Liu Wen-zheng |
| `zhu-2020-metagenome-wide-gut-microbiome-schizophrenia.md` | `10.1038/s41467-020-15457-9` | Feng Zhu, Yanmei Ju, Wei Wang | Zhu Feng, Ju Yanmei, Wang Wei |
| `zhu-2022-inflammatory-mechanisms.md` | `10.3389/fphar.2022.955672` | Jialei Zhu, Jing Jin, Jing Tang | Zhu Jialei, Jin Jing, Tang Jing |
| `zhu-2023-gut-microbiota-metabolic-pathways-cvd.md` | `10.3389/fmicb.2023.1272479` | Junwen Zhu, Jin Lyu, Ruochi Zhao | Zhu Junwen, Lyu Jin, Zhao Ruochi |
| `zhu-2024-toxic-essential-metals-gut-microbiota-health.md` | `10.3389/fnut.2024.1448388` | Qinheng Zhu, Boyan Chen, Fu Zhang | Zhu Qinheng, Chen Boyan, Zhang Fu |
| `zhu-2025-gut-brain-kidney-axis-ckd.md` | `10.3389/fmicb.2025.1535356` | Jue Zhu, Yutong Fu, Chinasa Valerie Olovo | Zhu Jue, Fu Yutong, Olovo Chinasa Valerie |
| `zhu-2025-microbiota-gut-brain-axis-depression-review.md` | `10.3389/fimmu.2025.1644160` | Zhangcheng Zhu, Yiwen Cheng, Xia Liu | Zhu Zhangcheng, Cheng Yiwen, Liu Xia |
| `zhuang-2024-asd-pathogenesis-biomarker-intervention.md` | `10.1002/mco2.497` | Hongbin Zhuang, Zhiyuan Liang, Guanwei Ma | Zhuang Hongbin, Liang Zhiyuan, Ma Guanwei |
| `zong-2023-fungal-mycobiome-hallmark-cancer-pan-cancer.md` | `10.1038/s41392-023-01334-6` | Zhi Zong, Fangfang Zhou, Long Zhang | Zong Zhi, Zhou Fangfang, Zhang Long |
| `zorea-2023-traf3-b-cells-microbiome-ovarian-cancer.md` | `10.1186/s13046-023-02680-7` | Jonathan Zorea, Yair Motro, Rami D. Mazor | Zorea Jonathan, Motro Yair, Mazor Roei D. |
| `zou-2022-gut-mycobiome-dysbiosis-hypertension-immunoglobulin.md` | `10.3389/fimmu.2022.1089295` | Yeqing Zou, Anxing Ge, Brako Lydia | Zou Yeqing, Ge Anxing, Lydia Brako |
| `zou-2022-mycobiome-dysbiosis-hypertension-light-chains.md` | `10.3389/fimmu.2022.1089295` | Yeqing Zou, Anxing Ge, Brako Lydia | Zou Yeqing, Ge Anxing, Lydia Brako |
| `zou-2022-mycobiome-hypertension-immunoglobulin.md` | `10.3389/fimmu.2022.1089295` | Yeqing Zou, Anxing Ge, Brako Lydia | Zou Yeqing, Ge Anxing, Lydia Brako |
| `zou-2024-multi-omic-microbiome-genome-transcriptome-crc.md` | `10.1186/s12967-024-04984-4` | Shaomin Zou, Chao Yang, Jieping Zhang | Zou Shaomin, Yang Chao, Zhang Jieping |
Internal wikilink audit
- Files scanned: 2332
- Wikilinks found: 33125
- Broken targets (unique file/target pairs): 101
Top 50 broken wikilink targets
| Target | Incoming count | Example files |
|---|---|---|
| `note evaluation risk ptes italy fish products` | 3 | entities/nickel.md, analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `periodontitis` | 3 | analyses/link-health-2026-04-19.md, sources/16s-rrna-t2d-subgingival-plaque-microbiota.md, sources/periodontitis-t2d-microbial-biomarkers.md |
| `oral gut axis` | 3 | analyses/link-health-2026-04-19.md, sources/16s-rrna-t2d-subgingival-plaque-microbiota.md, sources/periodontitis-t2d-microbial-biomarkers.md |
| `anaerococcus` | 3 | analyses/link-health-2026-04-19.md, sources/macsharry-2024-endometriosis-vaginal-microbiota-n-glycome.md, sources/rashwan-2025-cervical-cancer-hpv-vaginal-microbiome-megaanalysis.md |
| `stop unrestricted plant diet advanced ckd` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `stop probiotics alone uremic toxins ckd` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `pascal 2017 cd microbial signature` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `faecalibacterium hominis 4p15` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `karen pendergrass` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `zinc endometriosis 2024` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `lactoferrin genital 2019` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `endo vaginal microbiota glycome` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `altered microbiota ovarian endometrioma 2021` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `antibiotics metronidazole endo 2019` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `associations endo gut 2020` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `fecal metabolomics endo 2020` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `effect endo fecal bacteriota 2019` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `endo induces gut alterations 2018` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `gut imbalance hormone endo 2020` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `inflammatory cytokines peritoneal 2018` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `microbiome deep endo 2020` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `microbiome lower genital chinese` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `microbiota composition distribution 2020` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `molecular intrauterine colonization 2016` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `gut dysbiosis treg th17 graves 2020` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `graves targeted therapy 2025` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `graves ibd mendelian 2023` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `graves ra mendelian 2021` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `antonelli 2016 graves epidemiology` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `uncovering causal gut thyroid 2024` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `maciejewski 2025 trace elements thyroid` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `yao 2023 oral gut thyroid cancer` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `selenium thyroid autoimmunity 2015` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `abraham 2005 drug therapy graves` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `preliminary flora changes graves 2022` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `berberine methimazole graves 2021` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `gluten free thyroiditis 2024` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `gut microbiome metabolites graves 2022` | 2 | analyses/broken-links-2026-04-16.md, analyses/link-health-2026-04-19.md |
| `lactobacillus\` | 2 | analyses/gaps-and-improvements-2026-04-14.md, analyses/link-health-2026-04-19.md |
| `bifidobacterium\` | 2 | analyses/gaps-and-improvements-2026-04-14.md, analyses/link-health-2026-04-19.md |
| `saccharomyces cerevisiae\` | 2 | analyses/gaps-and-improvements-2026-04-14.md, analyses/link-health-2026-04-19.md |
| `bacillus\` | 2 | analyses/gaps-and-improvements-2026-04-14.md, analyses/link-health-2026-04-19.md |
| `oxygen` | 2 | analyses/link-health-2026-04-19.md, sources/chandrangsu-2016-zinc-intoxication-perr-heme-toxicity.md |
| `tannerella forsythia` | 2 | analyses/link-health-2026-04-19.md, sources/periodontitis-t2d-microbial-biomarkers.md |
| `treponema denticola` | 2 | analyses/link-health-2026-04-19.md, sources/periodontitis-t2d-microbial-biomarkers.md |
| `bacillus anthracis` | 2 | analyses/link-health-2026-04-19.md, sources/robinson-2020-metalation-natures-challenge.md |
| `interkingdom relationships` | 2 | sources/fungal-dysbiosis-2026-pregnancy-gdm-reference.md, sources/montoya-2013-metagenomic-analyses-bv-ovarian-cancer-thesis.md |
| `source filename` | 1 | analyses/zero-reference-pages-2026-04-19.md |
| `pregnancy` | 1 | sources/fungal-dysbiosis-2026-pregnancy-gdm-reference.md |
| `atopobium` | 1 | sources/gimeno-2026-diet-microbiota-pregnancy-success-mediterranean.md |
How to act on this report
- Bad-format DOIs: Either fix from the source PDF or demote to `doi: "not yet verified"`. Never guess.
- Crossref 404s: Almost always fabricated. Use `node scripts/lookup-dois.cjs` to attempt Crossref title search for the correct DOI; if nothing comes back, demote to `doi: "not yet verified"` and flag the page with `<!— NEEDS VERIFICATION —>`.
- Title mismatches: The DOI is real but points to a different paper than what the frontmatter claims. Investigate manually — either the DOI is wrong or the frontmatter metadata was fabricated.
- Broken wikilinks: Create the target page as a stub (per §2f and Rule 13) or fix the wikilink source spelling.
Re-running
``` node scripts/link-health-audit.cjs —offline
node scripts/link-health-audit.cjs —online
node scripts/link-health-audit.cjs —online —sample 50 ```