
Systemic-organ orientation for sepsis. The intact models do not depict blood poisoning, bacteremia, a pathogen or source site, organ failure, patient state, stage, severity, prognosis, emergency guidance, or diagnosis.
Scientific media record1 verified identifier
- Subject
- Sepsiscondition
- Identifiers
- MeSH:D018805
- Review
- Editorial review completeIdentifiers authority-verified · Accessibility validated · · sepsis|sepsis-pathology-v1.webp
- Digital source
- Trained-algorithmic mediaCreated with a trained generative algorithm and reviewed by WikiBiome for subject identity, scientific framing, identifiers, provenance, and accessibility.
- Scientific basis
- Sepsis — MeSHAbout Sepsis
- License
- CC BY-SA 4.0Created
Sepsis is life-threatening organ dysfunction caused by a dysregulated host response to infection. In the WikiBiome framework, sepsis represents the catastrophic failure of both Colonization Resistance (pathogen invasion) and Nutritional Immunity (Metal Sequestration) (metal restriction).
Infection metallomics—measuring siderophore levels and metal profiles in patient specimens—is emerging as a diagnostic approach for identifying the causative pathogen and predicting outcomes.[1]Infection metallomics for critical care in the post-COVID eraPatil RH, Luptakova D, Havlicek V · 2021Open reference 1 ↓
Gut-origin sepsis (from Bacteremia via gut barrier failure) is increasingly recognized, particularly in COVID-19[2]Bernard-Raichon et al. 2022 — Gut microbiome dysbiosis in antibiotic-treated COVID-19 patients is associated with microbial translocation and bacteremiaLucie Bernard-Raichon, Mericien Venzon, Jon Klein et al. · 2022Open reference 2 ↓ and critical illness. Iron availability is a key determinant: iron supplementation during active infection feeds siderophore-producing pathogens.[3]Bushman 2025 — The Exploitation of Nutrient Metals by Bacteria for Survival and Infection in the GutSummer D Bushman, Eric P Skaar, N Luisa Hiller · 2025Open reference 3 ↓
Evidence map2 cited passagesInspect provenance +
Sepsis is life-threatening organ dysfunction caused by a dysregulated host response to infection. In the WikiBiome framework, sepsis represents the catastrophic failure of both colonization resistance (pathogen invasion) and nutritional immunity (metal restriction). Infection metallomics—measuring siderophore levels and metal profiles in patient specimens
Gut-origin sepsis (from bacteremia via gut barrier failure) is increasingly recognized, particularly in COVID-19 and critical illness. Iron availability is a key determinant: iron supplementation during active infection feeds siderophore-producing pathogens.
One disease. Five evidence layers.
A generated systems view of the metals, organisms, host sequestration signals, ecological conditions, and microbial functions indexed for Sepsis.
Evidence layer
Taxonomic signature
Organisms reported as enriched or depleted, with their indexed functional context kept beside the name.No structured taxa indexed yet.
No structured taxa indexed yet.
Evidence layer
Nutritional immunity
Host metal-withholding, inflammatory, antioxidant, and microbial-metabolite signals indexed in the signature.Elevated host signals
0No structured signals indexed yet.
Depleted protective signals
0No structured signals indexed yet.
Evidence layer
Ecological state
The environmental conditions that connect the organism-level observations into a system.No structured ecological features indexed yet.
Evidence layer
Virulence functions
Microbial structures, enzymes, and acquisition systems implicated by the linked evidence.No structured virulence functions indexed yet.
The disease record, in full.
The original WikiBiome disease narrative remains intact beneath the generated signature atlas.
Cross-References#
- Bacteremia—bacterial translocation preceding sepsis
- Nutritional Immunity (Metal Sequestration)—iron restriction as antimicrobial defense
- Siderophores—pathogen iron acquisition in sepsis
- Endotoxemia—LPS-driven systemic inflammatory response
- Metallomics—infection metallomics for sepsis diagnostics
References 3
Numbered by first appearance in the article, then reconciled with its declared source list.
- 1
★Patil RH, Luptakova D, Havlicek V (2021). Infection metallomics for critical care in the post-COVID era. Mass Spectrometry Reviews.
- 2
Lucie Bernard-Raichon, Mericien Venzon, Jon Klein et al. (2022). Bernard-Raichon et al. 2022 — Gut microbiome dysbiosis in antibiotic-treated COVID-19 patients is associated with microbial translocation and bacteremia. Nature Communications.
- 3
Summer D Bushman, Eric P Skaar, N Luisa Hiller (2025). Bushman 2025 — The Exploitation of Nutrient Metals by Bacteria for Survival and Infection in the Gut. PLOS Pathogens.
Article network
Mentioned here 6
Pages linking here 1
Connect the evidence
Publicly readable discussion by ORCID-authenticated researchers. Questions, interpretation, methods, corrections, and new evidence stay attached to this record.
No discussion yet. Start with a precise question or a source-backed observation.
Activity and accepted changes
Accepted researcher context, editorial status, public discussion, and upstream Git revisions are shown together. Pending, declined, and withdrawn proposals remain private.
- published revision
massive wiki expansion: 149 stubs fixed, 100+ new pages, Rule 15 scan, keystone papers
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metals · microbes · host