Oxalate (oxalic acid) is a dietary compound (spinach, rhubarb, nuts, chocolate) and endogenous metabolic end-product that forms insoluble calcium oxalate crystals—the primary component of ~80% of kidney stones. The Gut Microbiome is the primary route of oxalate degradation via Oxalobacter formigenes and other oxalate-degrading bacteria (Oxalobacter).
Evidence map1 cited passagesInspect provenance +
In CKD, altered gut microbiota composition affects oxalate handling.
Microbiome Connection#
Oxalobacter formigenes uses oxalate as its sole carbon source, directly reducing enteric oxalate absorption and urinary oxalate excretion. Loss of O. formigenes (e.g., from antibiotic exposure) increases kidney stone risk.
In CKD, altered gut microbiota composition affects oxalate handling.[1]Hall et al. 2020 — CKD in Cats Alters Response of the Plasma Metabolome and Fecal Microbiome to Dietary FiberJean A. Hall, Matthew I. Jackson, Dennis E. Jewell et al. · 2020Open reference 1 ↓[2]Gut Microbiota Composition and Frailty in Elderly Patients with Chronic Kidney DiseaseElisabetta Margiotta, Francesco Miragoli, Maria Luisa Callegari et al. · 2020Open reference 2 ↓[3]Wang 2023 — Perturbed Gut Microbiome and Metabolomes Across CKD SeverityWang, Li, Zhang et al. · 2023Open reference 3 ↓
Dietary fiber modulates oxalate-degrading bacteria abundance.
Cross-References#
- Oxalobacter—primary oxalate-degrading organism
- Chronic Kidney Disease—oxalate handling impairment
- Calcium—calcium oxalate crystal formation
References 3
Numbered by first appearance in the article, then reconciled with its declared source list.
- 1
Jean A. Hall, Matthew I. Jackson, Dennis E. Jewell et al. (2020). Hall et al. 2020 — CKD in Cats Alters Response of the Plasma Metabolome and Fecal Microbiome to Dietary Fiber. PLOS ONE.
- 2
Elisabetta Margiotta, Francesco Miragoli, Maria Luisa Callegari et al. (2020). Gut Microbiota Composition and Frailty in Elderly Patients with Chronic Kidney Disease. PLOS ONE.
- 3
Wang, Li, Zhang et al. (2023). Wang 2023 — Perturbed Gut Microbiome and Metabolomes Across CKD Severity. Microbiome.
Article network
Mentioned here 4
Connect the evidence
Publicly readable discussion by ORCID-authenticated researchers. Questions, interpretation, methods, corrections, and new evidence stay attached to this record.
No discussion yet. Start with a precise question or a source-backed observation.
Activity and accepted changes
Accepted researcher context, editorial status, public discussion, and upstream Git revisions are shown together. Pending, declined, and withdrawn proposals remain private.
- published revision
Backfill gut microbiome concept links
Karen Pendergrass · +1 −1
Inspect exact Git diff ↗ - published revision
massive wiki expansion: 149 stubs fixed, 100+ new pages, Rule 15 scan, keystone papers
WikiBiome Deploy Bot · +32 −0
Inspect exact Git diff ↗

