Semantic Integrity Pass Log — 2026 04 18

Audit 1 — Cureva/WikiBiome Boundary

  • Scanned: ~409 pages (entities, concepts, analyses)
  • Violations detected: 43 across 18 pages
  • Fixed: 9 violations across 8 pages (mechanical rewrites to factual framing)
  • Verified factual (no fix needed): 34 violations across 10 pages (study-result dosage reporting)
  • Remaining: 0
  • Report: `wiki/analyses/boundary-violations-2026-04-18.md`

Audit 2 — Missing Intervention and STOP Pages

Interventions

  • Scanned: 1,714 source pages for named interventions
  • Missing intervention pages detected: 15 (≥2 sources each)
  • Intervention stubs created: 10
  1. omega-3-fatty-acids (33 sources discuss)
  2. chelation-therapy (45 sources)
  3. glutathione-supplementation (32 sources)
  4. metformin-intervention (25 sources)
  5. statin-therapy (18 sources)
  6. berberine (16 sources)
  7. gluten-free-diet (7 sources)
  8. melatonin (7 sources)
  9. resveratrol (5 sources)
  10. curcumin (4 sources)
  • Deferred: 5 lower-priority interventions (vitamin-e, vitamin-c, plant-based-diet, butyrate-supplementation — <5 sources or overlaps with existing pages)

STOPs

  • Existing wiki/stops/ files: 8
  • STOP pages in dist-v28 (from build JSON): 39
  • Missing wiki/stops/ files regenerated from content.generated.json: 31
  • Total wiki/stops/ now: 39

Audit 3 — Supersession Compliance

  • Entity/concept pages scanned: ~389 (all with ≥2 sources)
  • Paragraphs with contradiction language: 30
  • Genuine supersessions applied: 2
  • Copper in RA: arshad-2023 (case-control) supersedes yang-2016 (cross-sectional)
  • Copper in ASD: lin-2024 (meta-analysis, null) supersedes zhou-2025 (cross-sectional)
  • Source pages annotated: 4 (both sides of each conflict)
  • Biological complexity / already annotated: 28 (no action needed)
  • Report: `wiki/analyses/supersessions-2026-04-18.md`

Audit 4 — Keystone Re-Validation

  • Total keystone: true sources: 68
  • Already had ≥3 criteria listed: 5
  • Auto-evaluated (no criteria field): 63
  • Retained (≥3 criteria verified): 32 (criteria field added)
  • Demoted (<3 criteria): 31 (set keystone: false, demotion note added)
  • Total keystones retained: 37
  • Total keystones demoted: 31

Top keystones by criteria count:

  • scholefield-2024 (5/5): Cross-Domain, Signature Dependency, Cross-Condition, Mechanistic Linchpin, Paradigm Reframe
  • ghosh-2023 (4/5), giambo-2021 (4/5), jaishankar-2014 (4/5), patil-2021 (4/5), maier-2019 (4/5), pendergrass-2026-parkinsons (4/5)

Demoted sources retain all content; only `keystone: true` → `keystone: false` with a dated audit note in the body.