Session Summary
- Cycles completed: 2 (Cycle 2 clean → exit)
- Total fixes applied: 985
- Total deferred: 251
- Commits: 1 (`db335ed3`)
Remaining Work Per Step
Step 1 — Health Check
- CLEAN. No remaining issues.
Step 2 — Lint
- 223 source pages still missing `evidence_level`. These cannot be auto-inferred from body keywords — the PDFs need to be re-read to determine study design. List them with:
```bash cd ~/Documents/Claude/Raw && grep -rL '^evidence_level:' wiki/sources/*.md | wc -l ```
- 14 orphan pages (entities/concepts with no inbound wikilinks). See `wiki/analyses/manual-review-2026-04-18.md`.
Step 3 — Missing Conditions + Signatures
- 5 disease entities without signatures (bipolar-disorder, chronic-fatigue-syndrome, coronary-artery-disease, diabetic-kidney-disease, psoriasis). Each has <3 condition-tagged sources — need more source ingestion before signature stubs are warranted.
- covid-19 (9 sources) may warrant its own signature distinct from long-covid.
Step 4 — Ingest Raw Folder
- ~51 unmatched raw PDFs remain. Priority ingests:
- Heavy metals + rheumatoid arthritis papers (3-4 PDFs)
- Alzheimer's/neurodegeneration + metals papers (5-6 PDFs)
- Cadmium gut microbiota papers
- Nickel neurotoxicity papers
Step 5 — Ghost Pages
- 4 ghost source-page-format wikilinks with ≥3 refs (Van Dingenen 2023, McLeod 2023, de Paiva 2020, morton-2023). These need their raw PDFs located and ingested, or the wikilinks need to be corrected to the actual source page slug.
Resume Command
```bash ```